DAILY SCHEDULE (*subject to changes)
14:00 – 16:00 | REGISTRATION
16:00 – 17:00 | WELCOME CEREMONY I
16:00 – 16:15
Opening Remarks | César Ramírez-Sarmiento (UC, Chile)
16:15 – 16:30
What is Protein Design? | Alejandro Fernandez (UNAM, Mexico)
16:30 – 16:45
The Advent of AI in Protein Design | Chris Bahl (AI Proteins, USA) & Manuel Rozas (Kura Biotech, Chile)
16:45 – 17:00
Workshop Agenda, Instructors, Sponsors | César Ramírez-Sarmiento (UC, Chile)
17:00 – 17:30 | SOCIAL MIXER
17:30 – 19:00 | WELCOME CEREMONY II
17:30 – 17:45
Research and Teaching at UNAB | Danilo González-Nilo (UNAB, Chile)
17:45 – 18:00
Research and Teaching at IIBM UC | César Ramírez-Sarmiento (UC, Chile)
18:00 – 18:15
Biotech from Patagonia | Manuel Rozas (Kura Biotech)
18:15 – 18:30
Catalyzing Innovation: Directed Evolution from Patagonia | Javier Cáceres (Kura Biotech, Chile)
18:30 – 18:50
Better Medicines, Created Rapidly Through de novo Protein Design | Chris Bahl (AI Proteins, USA)
18:50 – 19:00
Closing Remarks | César Ramírez-Sarmiento (UC, Chile)
19:00 – 19:30 | PIZZA & BEERS
19:30 – 20:30 | POSTER SESSION 1
20:30 – 21:30 | POSTER SESSION 2
7:30 – 9:00 | BREAKFAST
9:00 – 12:30 | SESSION 1
9:00 – 9:20
Introduction to the Workshop | All Instructors
9:20 – 10:30
Introduction to Structure Prediction | Sergey Ovchinnikov (Harvard University, USA)
10:30 – 11:00
Coffee Break
11:00 – 11:45
Tutorial on Structure Prediction | Sergey Ovchinnikov (Harvard University, USA)
11:45 – 12:30
Introduction to AWS | Sergey Menis (AWS, USA)
https://catalog.workshops.aws/join
Github: https://github.com/pb3lab/AI4PD_2023.git
Github: https://github.com/pb3lab/AI4PD_2023
12:30 – 14:30 | LUNCH
14:30 – 18:30 | SESSION 2
14:30 – 15:00
Sergey Ovchinnikov - Part 2 - Tutorial
15:00 – 16:30
Introduction to Protein Design Tools (Backbone Design, Sequence Design) | Helen Eisenach (U Washington, USA) & Ben Meinen (AI Proteins, USA)
16:30 – 17:00
Coffee Break
17:00 – 18:30
Tutorials on Protein Design Tools (Backbone Design, Sequence Design) | Helen Eisenach (U Washington, USA) & Ben Meinen (AI Proteins, USA)
18:30 – 19:00 | HACKATHON 1: GROUP & PROJECT PLANNING
19:00 – 20:30 | DINNER
20:30 – 21:30 | HACKATHON 2: TEAM WORK
7:30 – 9:00 | BREAKFAST
9:00 – 10:00 | HACKATHON 3: TEAM WORK
some useful information: AWS Colab Setup
10:00 – 11:00 | SESSION 3
10:00 – 11:00
Protein and Peptide Binder Design | Ben Meinen (AI Proteins, USA) & Susana Vázquez Torres (U Washington, USA)
11:00 – 11:30
Coffee Break
11:30 – 12:30 | HACKATHON 4: TEAM WORK
12:30 – 14:00 | LUNCH
14:00 – 15:00 | SESSION 4
14:00 – 14:30
Prediction of Alternative Conformations | Felipe Engelberger (Leipzig University, Germany) & Sergey Ovchinnikov (Harvard University, USA)
14:30 - 15:00
Functional Site Scaffolding | Helen Eisenach (U Washington, USA)
15:00 – 16:00 | HACKATHON 5: TEAM WORK
16:00 – 16:00 | GROUP PHOTO!
16:00 – 16:30
Coffee Break
16:30 – 18:30 | HACKATHON 6: TEAM WORK
18:30 – 20:00 | DINNER
7:30 – 9:00 | BREAKFAST
9:00 – 12:30 | HACKATHON 7: WRAPPING UP AND FLASH TALKS!
9:00 – 10:30
Hackathon 7 | Wrapping Up!
10:30 – 10:45
Coffee Break
11:45 – 12:00
Hackathon 7 | Flash talks from each group
Closing Ceremony
12:00| HOTEL CHECKOUT
12:30 – 14:00 | CLOSING LUNCH